Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2455500..2455771 | Replicon | chromosome |
| Accession | NZ_CP116409 | ||
| Organism | Escherichia coli strain HH97 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2455630..2455733 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2455500..2455771 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PL329_RS11870 | 2452055..2452717 | - | 663 | WP_271710892.1 | exodeoxyribonuclease X | - |
| PL329_RS11875 | 2452741..2453397 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PL329_RS11880 | 2453499..2453729 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PL329_RS11885 | 2453868..2454242 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| PL329_RS11890 | 2454246..2455118 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| PL329_RS11895 | 2455131..2455472 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2455500..2455771 | - | 272 | - | - | Antitoxin |
| - | 2455630..2455733 | + | 104 | - | - | Toxin |
| PL329_RS11900 | 2455868..2456524 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| PL329_RS11905 | 2456525..2456716 | - | 192 | WP_001296140.1 | YebW family protein | - |
| PL329_RS11910 | 2456821..2457057 | - | 237 | WP_001295499.1 | YebV family protein | - |
| PL329_RS11915 | 2457175..2458614 | - | 1440 | WP_271710893.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T268668 NZ_CP116409:2455630-2455733 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT268668 NZ_CP116409:c2455771-2455500 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
