Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relE-yefM/YoeB-RelB
Location 1792239..1792752 Replicon chromosome
Accession NZ_CP116303
Organism Tenacibaculum finnmarkense strain 20-4106-2

Toxin (Protein)


Gene name relE Uniprot ID A0A2H1YD11
Locus tag PJH08_RS07780 Protein ID WP_058885305.1
Coordinates 1792495..1792752 (+) Length 86 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag PJH08_RS07775 Protein ID WP_271402632.1
Coordinates 1792239..1792493 (+) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PJH08_RS07760 (PJH08_07760) 1787460..1788341 + 882 WP_193702038.1 hypothetical protein -
PJH08_RS07765 (PJH08_07765) 1788498..1790177 + 1680 WP_193702037.1 toxin-antitoxin system YwqK family antitoxin -
PJH08_RS07770 (PJH08_07770) 1790269..1791549 - 1281 WP_271402631.1 group II intron reverse transcriptase/maturase -
PJH08_RS07775 (PJH08_07775) 1792239..1792493 + 255 WP_271402632.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
PJH08_RS07780 (PJH08_07780) 1792495..1792752 + 258 WP_058885305.1 Txe/YoeB family addiction module toxin Toxin
PJH08_RS07785 (PJH08_07785) 1793202..1793375 + 174 WP_232125673.1 hypothetical protein -
PJH08_RS07790 (PJH08_07790) 1793664..1794248 + 585 WP_271402633.1 hypothetical protein -
PJH08_RS07795 (PJH08_07795) 1794341..1795621 - 1281 WP_193708134.1 group II intron reverse transcriptase/maturase -
PJH08_RS07800 (PJH08_07800) 1796967..1797584 + 618 WP_232124626.1 DUF1266 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(1-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 86 a.a.        Molecular weight: 10475.04 Da        Isoelectric Point: 9.7333

>T268578 WP_058885305.1 NZ_CP116303:1792495-1792752 [Tenacibaculum finnmarkense]
MKYTFVDESWEDYLYWQKTDKKKLKKINELLKDIARNPFDGIGKPEALKHKYAGFWSRRIDSEHRLIYQYREGEILIAKC
RFHYN

Download         Length: 258 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9661.10 Da        Isoelectric Point: 7.0115

>AT268578 WP_271402632.1 NZ_CP116303:1792239-1792493 [Tenacibaculum finnmarkense]
MQITTVSDFRKDIKSYLDRVIKDFETLIINRGKDAGIVVMSLQEYNSLMATNHELSSRKNELRLDSAIDKLKNGMTLNKD
LIEN

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2H1YD11

Antitoxin

Source ID Structure

References