Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 347671..347942 | Replicon | chromosome |
| Accession | NZ_CP116241 | ||
| Organism | Escherichia coli strain 7.1994/NIST0056 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 347801..347904 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 347671..347942 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PH192_RS01640 | 344226..344888 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| PH192_RS01645 | 344912..345568 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PH192_RS01650 | 345670..345900 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PH192_RS01655 | 346039..346413 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| PH192_RS01660 | 346417..347289 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| PH192_RS01665 | 347302..347643 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 347671..347942 | - | 272 | - | - | Antitoxin |
| - | 347801..347904 | + | 104 | - | - | Toxin |
| PH192_RS01670 | 348039..348695 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| PH192_RS01675 | 348696..348887 | - | 192 | WP_000457842.1 | YebW family protein | - |
| PH192_RS01680 | 348992..349228 | - | 237 | WP_001295499.1 | YebV family protein | - |
| PH192_RS01685 | 349346..350785 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T268502 NZ_CP116241:347801-347904 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT268502 NZ_CP116241:c347942-347671 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
