Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2645958..2646229 | Replicon | chromosome |
| Accession | NZ_CP116176 | ||
| Organism | Escherichia coli strain DETEC-E601 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2645996..2646099 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2645958..2646229 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIC02_RS12710 | 2643115..2644554 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PIC02_RS12715 | 2644672..2644908 | + | 237 | WP_001295499.1 | YebV family protein | - |
| PIC02_RS12720 | 2645013..2645204 | + | 192 | WP_001296140.1 | YebW family protein | - |
| PIC02_RS12725 | 2645205..2645861 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2645958..2646229 | + | 272 | - | - | Antitoxin |
| - | 2645996..2646099 | - | 104 | - | - | Toxin |
| PIC02_RS12730 | 2646257..2646598 | - | 342 | WP_000976492.1 | YebY family protein | - |
| PIC02_RS12735 | 2646611..2647483 | - | 873 | WP_000879273.1 | copper homeostasis membrane protein CopD | - |
| PIC02_RS12740 | 2647487..2647861 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| PIC02_RS12745 | 2648000..2648230 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PIC02_RS12750 | 2648332..2648988 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PIC02_RS12755 | 2649012..2649674 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T268289 NZ_CP116176:c2646099-2645996 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT268289 NZ_CP116176:2645958-2646229 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
