Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2607575..2607843 | Replicon | chromosome |
| Accession | NZ_CP116103 | ||
| Organism | Escherichia coli strain DETEC-P836 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2607613..2607715 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2607575..2607843 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIB67_RS12920 | 2604731..2606170 | + | 1440 | WP_024186841.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PIB67_RS12925 | 2606289..2606525 | + | 237 | WP_001295499.1 | YebV family protein | - |
| PIB67_RS12930 | 2606630..2606821 | + | 192 | WP_024186842.1 | YebW family protein | - |
| PIB67_RS12935 | 2606822..2607478 | - | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| - | 2607575..2607843 | + | 269 | - | - | Antitoxin |
| - | 2607613..2607715 | - | 103 | - | - | Toxin |
| PIB67_RS12940 | 2607873..2608214 | - | 342 | WP_000984819.1 | YebY family protein | - |
| PIB67_RS12945 | 2608227..2609099 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| PIB67_RS12950 | 2609103..2609477 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| PIB67_RS12955 | 2609616..2609846 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PIB67_RS12960 | 2609948..2610604 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PIB67_RS12965 | 2610628..2611290 | + | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T267970 NZ_CP116103:c2607715-2607613 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT267970 NZ_CP116103:2607575-2607843 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
