Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2875687..2875958 | Replicon | chromosome |
| Accession | NZ_CP116044 | ||
| Organism | Escherichia coli strain STEC1575 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2875725..2875828 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2875687..2875958 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PHA55_RS14025 | 2872844..2874283 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PHA55_RS14030 | 2874401..2874637 | + | 237 | WP_001295499.1 | YebV family protein | - |
| PHA55_RS14035 | 2874742..2874933 | + | 192 | WP_001296140.1 | YebW family protein | - |
| PHA55_RS14040 | 2874934..2875590 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2875687..2875958 | + | 272 | - | - | Antitoxin |
| - | 2875725..2875828 | - | 104 | - | - | Toxin |
| PHA55_RS14045 | 2875986..2876327 | - | 342 | WP_000976492.1 | YebY family protein | - |
| PHA55_RS14050 | 2876340..2877212 | - | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| PHA55_RS14055 | 2877216..2877590 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| PHA55_RS14060 | 2877729..2877959 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PHA55_RS14065 | 2878061..2878717 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PHA55_RS14070 | 2878741..2879403 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T267711 NZ_CP116044:c2875828-2875725 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT267711 NZ_CP116044:2875687-2875958 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
