Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1275552..1275823 | Replicon | chromosome |
| Accession | NZ_CP114894 | ||
| Organism | Escherichia coli strain CM19 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1275590..1275693 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1275552..1275823 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O6X69_RS06385 | 1272709..1274148 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| O6X69_RS06390 | 1274266..1274502 | + | 237 | WP_001295499.1 | YebV family protein | - |
| O6X69_RS06395 | 1274607..1274798 | + | 192 | WP_000457842.1 | YebW family protein | - |
| O6X69_RS06400 | 1274799..1275455 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1275552..1275823 | + | 272 | - | - | Antitoxin |
| - | 1275590..1275693 | - | 104 | - | - | Toxin |
| O6X69_RS06405 | 1275851..1276192 | - | 342 | WP_000976476.1 | YebY family protein | - |
| O6X69_RS06410 | 1276205..1277077 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| O6X69_RS06415 | 1277081..1277455 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| O6X69_RS06420 | 1277594..1277824 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| O6X69_RS06425 | 1277926..1278582 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| O6X69_RS06430 | 1278606..1279268 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T266970 NZ_CP114894:c1275693-1275590 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT266970 NZ_CP114894:1275552-1275823 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
