Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2779898..2780107 | Replicon | chromosome |
| Accession | NZ_CP114571 | ||
| Organism | Enterobacter hormaechei strain E1532 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2779911..2780014 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2779898..2780107 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O2601_RS13430 (O2601_13430) | 2776166..2777614 | + | 1449 | WP_195892607.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| O2601_RS13435 (O2601_13435) | 2777721..2777960 | + | 240 | WP_003859885.1 | YebV family protein | - |
| O2601_RS13440 (O2601_13440) | 2777995..2778639 | - | 645 | WP_017693252.1 | protein-serine/threonine phosphatase | - |
| O2601_RS13445 (O2601_13445) | 2778807..2779787 | + | 981 | WP_023303891.1 | VirK/YbjX family protein | - |
| O2601_RS13450 (O2601_13450) | 2779833..2780030 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2779898..2780107 | + | 210 | - | - | Antitoxin |
| - | 2779911..2780014 | - | 104 | - | - | Toxin |
| O2601_RS13455 (O2601_13455) | 2780156..2780494 | - | 339 | WP_003859787.1 | YebY family protein | - |
| O2601_RS13460 (O2601_13460) | 2780511..2781380 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| O2601_RS13465 (O2601_13465) | 2781382..2781753 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| O2601_RS13470 (O2601_13470) | 2781891..2782121 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| O2601_RS13475 (O2601_13475) | 2782233..2782883 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| O2601_RS13480 (O2601_13480) | 2782908..2783570 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T266724 NZ_CP114571:c2780014-2779911 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT266724 NZ_CP114571:2779898-2780107 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
