Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1970839..1970984 | Replicon | chromosome |
| Accession | NZ_CP114375 | ||
| Organism | Klebsiella pneumoniae strain KP6870155 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1970875..1970977 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1970839..1970984 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NOZ09_RS09750 | 1965969..1968029 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| NOZ09_RS09755 | 1968033..1968692 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NOZ09_RS09760 | 1968771..1969001 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NOZ09_RS09765 | 1969114..1969488 | + | 375 | WP_023285314.1 | CopC domain-containing protein YobA | - |
| NOZ09_RS09770 | 1969492..1970361 | + | 870 | WP_023285313.1 | copper homeostasis membrane protein CopD | - |
| NOZ09_RS09775 | 1970378..1970716 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1970839..1970984 | - | 146 | - | - | Antitoxin |
| - | 1970875..1970977 | + | 103 | - | - | Toxin |
| NOZ09_RS09780 | 1971352..1971495 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NOZ09_RS09785 | 1971600..1972568 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| NOZ09_RS09790 | 1972725..1973378 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| NOZ09_RS09795 | 1973375..1973566 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NOZ09_RS09800 | 1973664..1973903 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NOZ09_RS09805 | 1974019..1975452 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T266644 NZ_CP114375:1970875-1970977 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT266644 NZ_CP114375:c1970984-1970839 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
