Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC(toxin)
Location 179239..179874 Replicon chromosome
Accession NZ_CP113827
Organism Pandoraea sp. XJJ-1

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag OYT13_RS00705 Protein ID WP_017233795.1
Coordinates 179455..179874 (+) Length 140 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag OYT13_RS00700 Protein ID WP_130024507.1
Coordinates 179239..179439 (+) Length 67 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OYT13_RS00685 (OYT13_00685) 174653..175501 + 849 WP_261939416.1 patatin-like phospholipase family protein -
OYT13_RS00690 (OYT13_00690) 175525..176535 - 1011 WP_130024506.1 D-2-hydroxyacid dehydrogenase family protein -
OYT13_RS00695 (OYT13_00695) 177098..178987 + 1890 WP_261939415.1 phosphoenolpyruvate carboxykinase (GTP) -
OYT13_RS00700 (OYT13_00700) 179239..179439 + 201 WP_130024507.1 DNA-binding protein Antitoxin
OYT13_RS00705 (OYT13_00705) 179455..179874 + 420 WP_017233795.1 type II toxin-antitoxin system VapC family toxin Toxin
OYT13_RS00710 (OYT13_00710) 179949..180581 - 633 WP_150562011.1 response regulator transcription factor -
OYT13_RS00715 (OYT13_00715) 180578..181963 - 1386 WP_017233793.1 cache domain-containing protein -
OYT13_RS00720 (OYT13_00720) 182329..184395 + 2067 WP_017233792.1 carbon starvation CstA family protein -
OYT13_RS00725 (OYT13_00725) 184412..184609 + 198 WP_017233791.1 YbdD/YjiX family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(2-124)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 140 a.a.        Molecular weight: 16029.49 Da        Isoelectric Point: 9.6766

>T266073 WP_017233795.1 NZ_CP113827:179455-179874 [Pandoraea sp. XJJ-1]
MYLLDTNVISECRKCGGGDEGVQRFIRRTDRDQSPRFLSVITLGELQRGVKVLRHRNDARQAVLIEAWLEKLKRDYAREI
LPVDQTICNVWARLRVPHSEHPIDKLIAATALVHRLVVVTRNVRDFSSTGVEVYNPFVH

Download         Length: 420 bp

Antitoxin


Download         Length: 67 a.a.        Molecular weight: 7378.54 Da        Isoelectric Point: 4.3021

>AT266073 WP_130024507.1 NZ_CP113827:179239-179439 [Pandoraea sp. XJJ-1]
MMLIEGIDEPLMRSIRSRAAMYGRTPEEEVLTILDNVARVPGFRSLGEALLAMPNVGLDSDFERIN

Download         Length: 201 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References