266072

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) ygfYX/Cpta(toxin)
Location 4007504..4008173 Replicon chromosome
Accession NZ_CP113808
Organism Shewanella sp. DAU305

Toxin (Protein)


Gene name ygfX Uniprot ID -
Locus tag OX890_RS17005 Protein ID WP_268649608.1
Coordinates 4007504..4007944 (-) Length 147 a.a.

Antitoxin (Protein)


Gene name ygfY Uniprot ID -
Locus tag OX890_RS17010 Protein ID WP_126492496.1
Coordinates 4007925..4008173 (-) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OX890_RS16980 (OX890_16980) 4002974..4003447 - 474 WP_006080776.1 SoxR reducing system RseC family protein -
OX890_RS16985 (OX890_16985) 4003458..4004390 - 933 WP_006080775.1 MucB/RseB C-terminal domain-containing protein -
OX890_RS16990 (OX890_16990) 4004403..4005029 - 627 WP_006080774.1 RseA family anti-sigma factor -
OX890_RS16995 (OX890_16995) 4005071..4005649 - 579 WP_006080773.1 RNA polymerase sigma factor RpoE -
OX890_RS17000 (OX890_17000) 4005839..4007452 + 1614 WP_168823426.1 L-aspartate oxidase -
OX890_RS17005 (OX890_17005) 4007504..4007944 - 441 WP_268649608.1 protein YgfX Toxin
OX890_RS17010 (OX890_17010) 4007925..4008173 - 249 WP_126492496.1 succinate dehydrogenase assembly factor 2 Antitoxin
OX890_RS17015 (OX890_17015) 4008259..4009167 - 909 WP_063884532.1 transcriptional activator NhaR -
OX890_RS17020 (OX890_17020) 4009240..4009626 - 387 WP_126492497.1 hypothetical protein -
OX890_RS17025 (OX890_17025) 4009629..4010798 - 1170 WP_006080767.1 Na+/H+ antiporter NhaA -
OX890_RS17030 (OX890_17030) 4010916..4011710 - 795 WP_006080766.1 thymidylate synthase -
OX890_RS17035 (OX890_17035) 4011707..4012516 - 810 WP_268649609.1 prolipoprotein diacylglyceryl transferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(6-135)

Antitoxin

Flavinator of succinate dehydrogenase

(7-77)


Sequences

Toxin        


Download         Length: 147 a.a.        Molecular weight: 17314.40 Da        Isoelectric Point: 8.0619

>T266072 WP_268649608.1 NZ_CP113808:c4007944-4007504 [Shewanella sp. DAU305]
VEDRHHSFSVKASFDQRLSLVVFICVCSSSFLLWPQSDNLTLSLIKYLFILLVCIFLLSQLWRLQHWRLDFVLSDKGEGR
LSTGEHFQVLKRTWVTPFVCLMYIEVDTQLRLLMVWADMLDDTDYRHLCRLLLRAKIKQTKPHTEV

Download         Length: 441 bp

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9722.37 Da        Isoelectric Point: 4.6127

>AT266072 WP_126492496.1 NZ_CP113808:c4008173-4007925 [Shewanella sp. DAU305]
MELMNIARVRWACRRGMLELDVLFQPFVENFYQEMSDQDKTVFIRLLECEDPELFAWFMGHEVCPDAELARMVVKVRGRP
AP

Download         Length: 249 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References