Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1992605..1992876 | Replicon | chromosome |
| Accession | NZ_CP110978 | ||
| Organism | Escherichia coli strain XYEH3934 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1992735..1992838 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1992605..1992876 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ORI33_RS09625 | 1989160..1989822 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| ORI33_RS09630 | 1989846..1990502 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| ORI33_RS09635 | 1990604..1990834 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ORI33_RS09640 | 1990973..1991347 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| ORI33_RS09645 | 1991351..1992223 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| ORI33_RS09650 | 1992236..1992577 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1992605..1992876 | - | 272 | - | - | Antitoxin |
| - | 1992735..1992838 | + | 104 | - | - | Toxin |
| ORI33_RS09655 | 1992973..1993629 | + | 657 | WP_095885616.1 | protein-serine/threonine phosphatase | - |
| ORI33_RS09660 | 1993630..1993821 | - | 192 | WP_001338167.1 | YebW family protein | - |
| ORI33_RS09665 | 1993926..1994162 | - | 237 | WP_001338166.1 | YebV family protein | - |
| ORI33_RS09670 | 1994280..1995719 | - | 1440 | WP_001400472.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T264646 NZ_CP110978:1992735-1992838 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT264646 NZ_CP110978:c1992876-1992605 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
