Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE-RelB
Location 251159..251729 Replicon chromosome
Accession NZ_CP110644
Organism Pseudomonas sp. KU26590

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag OKW98_RS01190 Protein ID WP_265387640.1
Coordinates 251445..251729 (+) Length 95 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag OKW98_RS01185 Protein ID WP_265387639.1
Coordinates 251159..251458 (+) Length 100 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OKW98_RS01155 (OKW98_01155) 246350..247687 - 1338 WP_037016614.1 ammonium transporter -
OKW98_RS01160 (OKW98_01160) 247722..248060 - 339 WP_002555808.1 P-II family nitrogen regulator -
OKW98_RS01165 (OKW98_01165) 248478..248762 + 285 WP_265387636.1 accessory factor UbiK family protein -
OKW98_RS01170 (OKW98_01170) 248783..248935 - 153 Protein_230 addiction module antidote protein, HigA family -
OKW98_RS01175 (OKW98_01175) 248954..249487 - 534 WP_265387637.1 GNAT family N-acetyltransferase -
OKW98_RS01180 (OKW98_01180) 249604..251097 + 1494 WP_265387638.1 YifB family Mg chelatase-like AAA ATPase -
OKW98_RS01185 (OKW98_01185) 251159..251458 + 300 WP_265387639.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
OKW98_RS01190 (OKW98_01190) 251445..251729 + 285 WP_265387640.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
OKW98_RS01195 (OKW98_01195) 251765..253741 - 1977 WP_265387641.1 methyl-accepting chemotaxis protein -
OKW98_RS01200 (OKW98_01200) 253960..254880 - 921 WP_133773820.1 LysR substrate-binding domain-containing protein -
OKW98_RS01205 (OKW98_01205) 255046..256428 + 1383 WP_265389619.1 NorM family multidrug efflux MATE transporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-90)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(5-52)


Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 10709.39 Da        Isoelectric Point: 8.4794

>T264069 WP_265387640.1 NZ_CP110644:251445-251729 [Pseudomonas sp. KU26590]
VLTIEWSKYARDDLLAILEYVAGHDAKAAWRLKEEIDVRIGHLPRHPRLYKAGREAGTREIVVAPNYLVVYAETPTTLLI
LRVLHAAQQWPPNA

Download         Length: 285 bp

Antitoxin


Download         Length: 100 a.a.        Molecular weight: 10844.19 Da        Isoelectric Point: 6.0705

>AT264069 WP_265387639.1 NZ_CP110644:251159-251458 [Pseudomonas sp. KU26590]
MTTQTSMLHVRIDQALKNQASETLANFGLTISDAVRILLTRVVREGGLPAGLGAHPDAYDQWFRAKVREAMEDSGPTHSH
EDVMAAATELLDRKRGADN

Download         Length: 300 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References