Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1996770..1997002 | Replicon | chromosome |
| Accession | NZ_CP110258 | ||
| Organism | Escherichia albertii strain KBSW50i | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1996897..1997000 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1996770..1997002 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N6N69_RS09555 | 1993700..1994362 | - | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
| N6N69_RS09560 | 1994386..1994598 | - | 213 | Protein_1863 | carbon-nitrogen hydrolase family protein | - |
| N6N69_RS09565 | 1994764..1994994 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| N6N69_RS09570 | 1995133..1995510 | + | 378 | WP_000741562.1 | CopC domain-containing protein YobA | - |
| N6N69_RS09575 | 1995514..1996386 | + | 873 | WP_044708630.1 | copper homeostasis membrane protein CopD | - |
| N6N69_RS09580 | 1996399..1996740 | + | 342 | WP_000976487.1 | DUF2511 domain-containing protein | - |
| - | 1996770..1997002 | - | 233 | - | - | Antitoxin |
| - | 1996897..1997000 | + | 104 | - | - | Toxin |
| N6N69_RS09585 | 1997622..1998200 | + | 579 | WP_149997555.1 | bfpT-regulated chaperone | - |
| N6N69_RS09590 | 1998657..1998821 | + | 165 | WP_157944741.1 | hypothetical protein | - |
| N6N69_RS09595 | 1999395..1999715 | + | 321 | WP_105227623.1 | hypothetical protein | - |
| N6N69_RS09600 | 1999788..2001245 | + | 1458 | WP_024165002.1 | Trk system potassium transporter TrkG | - |
| N6N69_RS09605 | 2001831..2001934 | - | 104 | Protein_1872 | secretion protein EspJ | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T263483 NZ_CP110258:1996897-1997000 [Escherichia albertii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT263483 NZ_CP110258:c1997002-1996770 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
