Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2032117..2032211 Replicon chromosome
Accession NC_017154
Organism Yersinia pestis D106004

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2032117..2032210 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2032117..2032211 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
YPD4_RS09270 2027689..2028639 + 951 WP_002211090.1 prolyl aminopeptidase -
YPD4_RS09275 2028699..2028929 - 231 WP_002211091.1 DNA polymerase III subunit theta -
YPD4_RS09280 2029330..2029839 + 510 WP_002211092.1 non-heme ferritin -
YPD4_RS09285 2030236..2030622 + 387 WP_002211093.1 CopC domain-containing protein YobA -
YPD4_RS09290 2030625..2031509 + 885 WP_002211094.1 copper homeostasis membrane protein CopD -
YPD4_RS09295 2031606..2031947 + 342 WP_002211095.1 YebY family protein -
- 2032117..2032210 + 94 - - Toxin
- 2032117..2032211 - 95 - - Antitoxin
YPD4_RS09305 2032469..2032795 - 327 WP_002211097.1 DUF1493 family protein -
YPD4_RS09310 2032789..2033247 - 459 WP_002211098.1 hypothetical protein -
YPD4_RS09315 2033779..2034939 + 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
YPD4_RS09320 2034939..2037017 + 2079 WP_002211100.1 flagellar biosynthesis protein FlhA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T26294 NC_017154:2032117-2032210 [Yersinia pestis D106004]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT26294 NC_017154:c2032211-2032117 [Yersinia pestis D106004]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References