Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4846456..4846596 | Replicon | chromosome |
| Accession | NZ_CP109739 | ||
| Organism | Serratia nevei strain 2017-45-174 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4846456..4846552 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4846456..4846596 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OI978_RS23415 (OI978_23425) | 4841804..4842139 | - | 336 | WP_038875682.1 | hypothetical protein | - |
| OI978_RS23420 (OI978_23430) | 4842173..4842598 | - | 426 | WP_049193395.1 | hypothetical protein | - |
| OI978_RS23425 (OI978_23435) | 4842660..4842959 | - | 300 | WP_038875685.1 | hypothetical protein | - |
| OI978_RS23430 (OI978_23440) | 4843597..4843845 | - | 249 | WP_165698098.1 | helix-turn-helix transcriptional regulator | - |
| OI978_RS23435 (OI978_23445) | 4843820..4844383 | - | 564 | WP_033642723.1 | DUF2975 domain-containing protein | - |
| OI978_RS23440 (OI978_23450) | 4844541..4845740 | - | 1200 | WP_047727768.1 | trans-2-enoyl-CoA reductase family protein | - |
| OI978_RS23445 (OI978_23455) | 4845924..4846274 | - | 351 | WP_033638116.1 | DUF4377 domain-containing protein | - |
| - | 4846456..4846552 | - | 97 | - | - | Toxin |
| - | 4846456..4846596 | + | 141 | - | - | Antitoxin |
| OI978_RS23450 (OI978_23460) | 4846694..4847035 | - | 342 | WP_025302452.1 | YebY family protein | - |
| OI978_RS23455 (OI978_23465) | 4847105..4847986 | - | 882 | WP_048233440.1 | copper homeostasis membrane protein CopD | - |
| OI978_RS23460 (OI978_23470) | 4847989..4848372 | - | 384 | WP_038875845.1 | CopC domain-containing protein YobA | - |
| OI978_RS23465 (OI978_23475) | 4848699..4849217 | - | 519 | WP_038875847.1 | non-heme ferritin | - |
| OI978_RS23470 (OI978_23480) | 4849558..4849788 | + | 231 | WP_033638067.1 | DNA polymerase III subunit theta | - |
| OI978_RS23475 (OI978_23485) | 4849822..4850775 | - | 954 | WP_038875880.1 | prolyl aminopeptidase | - |
| OI978_RS23480 (OI978_23490) | 4850970..4851395 | - | 426 | WP_134266969.1 | RNA polymerase-binding protein DksA | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T262043 NZ_CP109739:c4846552-4846456 [Serratia nevei]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT262043 NZ_CP109739:4846456-4846596 [Serratia nevei]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
