Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2258110..2258254 | Replicon | chromosome |
| Accession | NZ_CP109694 | ||
| Organism | Enterobacter asburiae strain 2017-45-54-05 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2258116..2258219 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2258110..2258254 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OI909_RS11020 (OI909_11015) | 2253267..2254715 | + | 1449 | WP_196354251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OI909_RS11025 (OI909_11020) | 2254822..2255061 | + | 240 | WP_008500472.1 | YebV family protein | - |
| OI909_RS11030 (OI909_11025) | 2255096..2255740 | - | 645 | WP_033145837.1 | protein-serine/threonine phosphatase | - |
| OI909_RS11035 (OI909_11030) | 2255907..2256848 | + | 942 | WP_033145838.1 | VirK/YbjX family protein | - |
| OI909_RS11040 (OI909_11035) | 2257022..2257918 | + | 897 | WP_182072464.1 | benzoate transporter | - |
| - | 2258110..2258254 | + | 145 | - | - | Antitoxin |
| - | 2258116..2258219 | - | 104 | - | - | Toxin |
| OI909_RS11045 (OI909_11040) | 2258358..2258696 | - | 339 | WP_033145840.1 | YebY family protein | - |
| OI909_RS11050 (OI909_11045) | 2258713..2259582 | - | 870 | WP_048979917.1 | copper homeostasis membrane protein CopD | - |
| OI909_RS11055 (OI909_11050) | 2259584..2259955 | - | 372 | WP_182072466.1 | CopC domain-containing protein YobA | - |
| OI909_RS11060 (OI909_11055) | 2260092..2260322 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| OI909_RS11065 (OI909_11060) | 2260433..2261083 | + | 651 | WP_047061090.1 | carbon-nitrogen hydrolase family protein | - |
| OI909_RS11070 (OI909_11065) | 2261108..2261770 | + | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T261999 NZ_CP109694:c2258219-2258116 [Enterobacter asburiae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT261999 NZ_CP109694:2258110-2258254 [Enterobacter asburiae]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
