Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2075116..2075261 | Replicon | chromosome |
| Accession | NZ_CP107463 | ||
| Organism | Klebsiella pneumoniae strain CRKP_12 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2075152..2075254 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2075116..2075261 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OH534_RS10255 | 2070246..2072306 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| OH534_RS10260 | 2072310..2072969 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| OH534_RS10265 | 2073048..2073278 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OH534_RS10270 | 2073391..2073765 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OH534_RS10275 | 2073769..2074638 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| OH534_RS10280 | 2074655..2074993 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2075116..2075261 | - | 146 | - | - | Antitoxin |
| - | 2075152..2075254 | + | 103 | - | - | Toxin |
| OH534_RS10285 | 2075629..2075772 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| OH534_RS10290 | 2075877..2076845 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OH534_RS10295 | 2077002..2077655 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| OH534_RS10300 | 2077652..2077843 | - | 192 | WP_002911395.1 | YebW family protein | - |
| OH534_RS10305 | 2077941..2078180 | - | 240 | WP_002911393.1 | YebV family protein | - |
| OH534_RS10310 | 2078296..2079729 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T261410 NZ_CP107463:2075152-2075254 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT261410 NZ_CP107463:c2075261-2075116 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
