Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 760516..760661 | Replicon | chromosome |
| Accession | NZ_CP107390 | ||
| Organism | Klebsiella pneumoniae strain CRKP_28 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 760523..760625 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 760516..760661 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OH501_RS03870 | 756048..757481 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OH501_RS03875 | 757597..757836 | + | 240 | WP_002911393.1 | YebV family protein | - |
| OH501_RS03880 | 757934..758125 | + | 192 | WP_002911395.1 | YebW family protein | - |
| OH501_RS03885 | 758122..758775 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| OH501_RS03890 | 758932..759900 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OH501_RS03895 | 760005..760148 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 760516..760661 | + | 146 | - | - | Antitoxin |
| - | 760523..760625 | - | 103 | - | - | Toxin |
| OH501_RS03900 | 760784..761122 | - | 339 | WP_002911404.1 | YebY family protein | - |
| OH501_RS03905 | 761139..762008 | - | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| OH501_RS03910 | 762012..762386 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OH501_RS03915 | 762499..762729 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OH501_RS03920 | 762808..763467 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| OH501_RS03925 | 763471..765531 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T261040 NZ_CP107390:c760625-760523 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT261040 NZ_CP107390:760516-760661 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
