Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 697843..697988 | Replicon | chromosome |
| Accession | NZ_CP107363 | ||
| Organism | Klebsiella pneumoniae strain CRKP_33 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 697850..697952 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 697843..697988 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OH511_RS03495 | 693375..694808 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OH511_RS03500 | 694924..695163 | + | 240 | WP_002911393.1 | YebV family protein | - |
| OH511_RS03505 | 695261..695452 | + | 192 | WP_002911395.1 | YebW family protein | - |
| OH511_RS03510 | 695449..696102 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| OH511_RS03515 | 696259..697227 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OH511_RS03520 | 697332..697475 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 697843..697988 | + | 146 | - | - | Antitoxin |
| - | 697850..697952 | - | 103 | - | - | Toxin |
| OH511_RS03525 | 698111..698449 | - | 339 | WP_002911404.1 | YebY family protein | - |
| OH511_RS03530 | 698466..699335 | - | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| OH511_RS03535 | 699339..699713 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OH511_RS03540 | 699826..700056 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OH511_RS03545 | 700135..700794 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| OH511_RS03550 | 700798..702858 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T260919 NZ_CP107363:c697952-697850 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT260919 NZ_CP107363:697843-697988 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
