Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4780558..4780703 | Replicon | chromosome |
| Accession | NZ_CP107043 | ||
| Organism | Klebsiella pneumoniae strain KPTA-2108 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4780594..4780696 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4780558..4780703 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OEC00_RS23290 | 4775688..4777748 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| OEC00_RS23295 | 4777752..4778411 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| OEC00_RS23300 | 4778490..4778720 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OEC00_RS23305 | 4778833..4779207 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OEC00_RS23310 | 4779211..4780080 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| OEC00_RS23315 | 4780097..4780435 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4780558..4780703 | - | 146 | - | - | Antitoxin |
| - | 4780594..4780696 | + | 103 | - | - | Toxin |
| OEC00_RS23320 | 4781072..4781215 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| OEC00_RS23325 | 4781320..4782288 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OEC00_RS23330 | 4782445..4783098 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| OEC00_RS23335 | 4783095..4783286 | - | 192 | WP_002911395.1 | YebW family protein | - |
| OEC00_RS23340 | 4783384..4783623 | - | 240 | WP_002911393.1 | YebV family protein | - |
| OEC00_RS23345 | 4783739..4785172 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T260488 NZ_CP107043:4780594-4780696 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT260488 NZ_CP107043:c4780703-4780558 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
