Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1984924..1985195 | Replicon | chromosome |
| Accession | NZ_CP106924 | ||
| Organism | Escherichia coli strain MFDS1016424 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1985054..1985157 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1984924..1985195 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OEG87_RS09645 | 1981479..1982141 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| OEG87_RS09650 | 1982165..1982821 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| OEG87_RS09655 | 1982923..1983153 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| OEG87_RS09660 | 1983292..1983666 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| OEG87_RS09665 | 1983670..1984542 | + | 873 | WP_001569950.1 | copper homeostasis membrane protein CopD | - |
| OEG87_RS09670 | 1984555..1984896 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1984924..1985195 | - | 272 | - | - | Antitoxin |
| - | 1985054..1985157 | + | 104 | - | - | Toxin |
| OEG87_RS09675 | 1985292..1985948 | + | 657 | WP_263307975.1 | protein-serine/threonine phosphatase | - |
| OEG87_RS09680 | 1985949..1986140 | - | 192 | WP_001296140.1 | YebW family protein | - |
| OEG87_RS09685 | 1986245..1986481 | - | 237 | WP_001295499.1 | YebV family protein | - |
| OEG87_RS09690 | 1986599..1988038 | - | 1440 | WP_263307976.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T260051 NZ_CP106924:1985054-1985157 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT260051 NZ_CP106924:c1985195-1984924 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAAATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAAATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
