Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 4314804..4314886 Replicon chromosome
Accession NZ_CP104920
Organism Dickeya solani strain RNS 05.1.2A

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 4314806..4314886 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 4314804..4314886 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
RS71_RS19265 4310667..4311764 - 1098 WP_057083337.1 HDOD domain-containing protein -
RS71_RS19270 4311755..4312870 - 1116 WP_057083338.1 ATP-binding protein -
RS71_RS19275 4312863..4313987 - 1125 WP_022633457.1 FIST N-terminal domain-containing protein -
- 4314804..4314886 + 83 - - Antitoxin
- 4314806..4314886 - 81 - - Toxin
RS71_RS19280 4315056..4315394 - 339 WP_022633458.1 YebY family protein -
RS71_RS19285 4315941..4316357 + 417 WP_226061826.1 hypothetical protein -
RS71_RS19290 4316705..4316953 + 249 WP_022633460.1 GlsB/YeaQ/YmgE family stress response membrane protein -
RS71_RS19295 4317070..4318812 - 1743 WP_057083340.1 ABC transporter permease subunit -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 81 bp

>T259502 NZ_CP104920:c4314886-4314806 [Dickeya solani]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T

Antitoxin


Download         Length: 83 bp

>AT259502 NZ_CP104920:4314804-4314886 [Dickeya solani]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References