Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 2763733..2764411 Replicon chromosome
Accession NZ_CP104920
Organism Dickeya solani strain RNS 05.1.2A

Toxin (Protein)


Gene name cptA Uniprot ID -
Locus tag RS71_RS12560 Protein ID WP_057084793.1
Coordinates 2763980..2764411 (+) Length 144 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID -
Locus tag RS71_RS12555 Protein ID WP_013316361.1
Coordinates 2763733..2763999 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
RS71_RS12535 2760187..2760837 + 651 WP_057084789.1 LysE family translocator -
RS71_RS12540 2760911..2761519 - 609 WP_057084790.1 HD domain-containing protein -
RS71_RS12545 2761730..2762380 + 651 WP_057084791.1 hemolysin III family protein -
RS71_RS12550 2762453..2763433 - 981 WP_057084792.1 tRNA-modifying protein YgfZ -
RS71_RS12555 2763733..2763999 + 267 WP_013316361.1 FAD assembly factor SdhE Antitoxin
RS71_RS12560 2763980..2764411 + 432 WP_057084793.1 protein YgfX Toxin
RS71_RS12565 2764502..2765020 - 519 WP_057084794.1 flavodoxin FldB -
RS71_RS12570 2765149..2766474 - 1326 WP_057084795.1 MFS transporter -
RS71_RS12575 2766822..2767721 + 900 WP_057084796.1 site-specific tyrosine recombinase XerD -
RS71_RS12580 2767810..2768526 + 717 WP_057084797.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(2-132)

Antitoxin

Flavinator of succinate dehydrogenase

(8-79)


Sequences

Toxin        


Download         Length: 144 a.a.        Molecular weight: 16821.51 Da        Isoelectric Point: 11.7737

>T259496 WP_057084793.1 NZ_CP104920:2763980-2764411 [Dickeya solani]
VAQWQCDLRVSWRMQLFSLLTHGFLVLMILLAPWPDGYAPLWLGLVTLVVFGFVRSQRIIKSRQGEISLHGENQLHWQQR
DWQIARRPWVMRNGVLLSLRATNGKGHQRLWLASDSMGNEEWRLLRQLLQQHPLQGTESSRHH

Download         Length: 432 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10476.98 Da        Isoelectric Point: 5.5981

>AT259496 WP_013316361.1 NZ_CP104920:2763733-2763999 [Dickeya solani]
MDINNKSRIHWACRRGMRELDISIMPFFEHEYDTLSDDDKQQFIRLLQCDDPDLFNWLMNHGEPVDPALKRMVSLIQTRN
KDRGPVAM

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References