Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 866860..867011 | Replicon | chromosome |
| Accession | NZ_CP104836 | ||
| Organism | Enterobacter cloacae strain 2022CK-00409 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 866873..866976 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 866860..867011 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N7S94_RS04195 (N7S94_04190) | 863136..864578 | + | 1443 | WP_029882304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| N7S94_RS04200 (N7S94_04195) | 864684..864923 | + | 240 | WP_013096113.1 | YebV family protein | - |
| N7S94_RS04205 (N7S94_04200) | 864957..865601 | - | 645 | WP_178327594.1 | protein-serine/threonine phosphatase | - |
| N7S94_RS04210 (N7S94_04205) | 865768..866709 | + | 942 | WP_178327595.1 | VirK/YbjX family protein | - |
| - | 866860..867011 | + | 152 | - | - | Antitoxin |
| - | 866873..866976 | - | 104 | - | - | Toxin |
| N7S94_RS04215 (N7S94_04210) | 867116..867454 | - | 339 | WP_013096105.1 | YebY family protein | - |
| N7S94_RS04220 (N7S94_04215) | 867471..868340 | - | 870 | WP_130626250.1 | copper homeostasis membrane protein CopD | - |
| N7S94_RS04225 (N7S94_04220) | 868342..868713 | - | 372 | WP_178327596.1 | CopC domain-containing protein YobA | - |
| N7S94_RS04230 (N7S94_04225) | 868851..869081 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| N7S94_RS04235 (N7S94_04230) | 869191..869841 | + | 651 | WP_038419917.1 | carbon-nitrogen hydrolase family protein | - |
| N7S94_RS04240 (N7S94_04235) | 869865..870527 | + | 663 | WP_013096100.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T259211 NZ_CP104836:c866976-866873 [Enterobacter cloacae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 152 bp
>AT259211 NZ_CP104836:866860-867011 [Enterobacter cloacae]
CTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
