Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2651389..2651598 | Replicon | chromosome |
| Accession | NZ_CP104689 | ||
| Organism | Enterobacter hormaechei strain 2020CK-00376 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2651402..2651505 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2651389..2651598 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5929_RS12620 (N5929_01175) | 2647657..2649105 | + | 1449 | WP_195207010.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| N5929_RS12625 (N5929_01170) | 2649212..2649451 | + | 240 | WP_003859885.1 | YebV family protein | - |
| N5929_RS12630 (N5929_01165) | 2649486..2650130 | - | 645 | WP_017693252.1 | protein-serine/threonine phosphatase | - |
| N5929_RS12635 (N5929_01160) | 2650298..2651278 | + | 981 | WP_023303891.1 | VirK/YbjX family protein | - |
| N5929_RS12640 (N5929_01155) | 2651324..2651521 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2651389..2651598 | + | 210 | - | - | Antitoxin |
| - | 2651402..2651505 | - | 104 | - | - | Toxin |
| N5929_RS12645 (N5929_01150) | 2651647..2651985 | - | 339 | WP_003859787.1 | YebY family protein | - |
| N5929_RS12650 (N5929_01145) | 2652002..2652871 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| N5929_RS12655 (N5929_01140) | 2652873..2653244 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| N5929_RS12660 (N5929_01135) | 2653382..2653612 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| N5929_RS12665 (N5929_01130) | 2653724..2654374 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| N5929_RS12670 (N5929_01125) | 2654399..2655061 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T259006 NZ_CP104689:c2651505-2651402 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT259006 NZ_CP104689:2651389-2651598 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
