Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2780195..2780404 | Replicon | chromosome |
| Accession | NZ_CP104403 | ||
| Organism | Enterobacter hormaechei subsp. steigerwaltii strain csa13R | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2780208..2780311 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2780195..2780404 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5F14_RS13435 (N5F14_13435) | 2776463..2777911 | + | 1449 | WP_197731399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| N5F14_RS13440 (N5F14_13440) | 2778018..2778257 | + | 240 | WP_003859885.1 | YebV family protein | - |
| N5F14_RS13445 (N5F14_13445) | 2778292..2778936 | - | 645 | WP_047733789.1 | protein-serine/threonine phosphatase | - |
| N5F14_RS13450 (N5F14_13450) | 2779104..2780084 | + | 981 | WP_047733791.1 | VirK/YbjX family protein | - |
| N5F14_RS13455 (N5F14_13455) | 2780130..2780327 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2780195..2780404 | + | 210 | - | - | Antitoxin |
| - | 2780208..2780311 | - | 104 | - | - | Toxin |
| N5F14_RS13460 (N5F14_13460) | 2780454..2780792 | - | 339 | WP_033486805.1 | YebY family protein | - |
| N5F14_RS13465 (N5F14_13465) | 2780809..2781678 | - | 870 | WP_017384341.1 | copper homeostasis membrane protein CopD | - |
| N5F14_RS13470 (N5F14_13470) | 2781680..2782051 | - | 372 | WP_023296802.1 | CopC domain-containing protein YobA | - |
| N5F14_RS13475 (N5F14_13475) | 2782189..2782419 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| N5F14_RS13480 (N5F14_13480) | 2782531..2783181 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| N5F14_RS13485 (N5F14_13485) | 2783205..2783867 | + | 663 | WP_096946701.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T257889 NZ_CP104403:c2780311-2780208 [Enterobacter hormaechei subsp. steigerwaltii]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT257889 NZ_CP104403:2780195-2780404 [Enterobacter hormaechei subsp. steigerwaltii]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
