Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1999469..1999740 | Replicon | chromosome |
| Accession | NZ_CP104384 | ||
| Organism | Escherichia coli strain JNQH498 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1999599..1999702 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1999469..1999740 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KIG00_RS09690 | 1996024..1996686 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KIG00_RS09695 | 1996710..1997366 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KIG00_RS09700 | 1997468..1997698 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KIG00_RS09705 | 1997837..1998211 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| KIG00_RS09710 | 1998215..1999087 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| KIG00_RS09715 | 1999100..1999441 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1999469..1999740 | - | 272 | - | - | Antitoxin |
| - | 1999599..1999702 | + | 104 | - | - | Toxin |
| KIG00_RS09720 | 1999837..2000373 | + | 537 | Protein_1896 | protein-serine/threonine phosphatase | - |
| KIG00_RS09730 | 2001142..2001270 | + | 129 | Protein_1898 | serine/threonine-protein phosphatase | - |
| KIG00_RS09735 | 2001271..2001462 | - | 192 | WP_000457842.1 | YebW family protein | - |
| KIG00_RS09740 | 2001567..2001803 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KIG00_RS09745 | 2001921..2003360 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T257838 NZ_CP104384:1999599-1999702 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT257838 NZ_CP104384:c1999740-1999469 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
