Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2693482..2693627 | Replicon | chromosome |
| Accession | NZ_CP104362 | ||
| Organism | Salmonella enterica strain PNUSAS118606 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2693484..2693587 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2693482..2693627 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N4276_RS13235 | 2688682..2688900 | - | 219 | WP_001524708.1 | hypothetical protein | - |
| N4276_RS13240 | 2689202..2689300 | - | 99 | WP_223151200.1 | hypothetical protein | - |
| N4276_RS13245 | 2689619..2691598 | - | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| N4276_RS13250 | 2692012..2692290 | + | 279 | WP_001575998.1 | excisionase | - |
| N4276_RS13255 | 2692265..2693344 | + | 1080 | WP_000087636.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2693482..2693627 | + | 146 | - | - | Antitoxin |
| - | 2693484..2693587 | - | 104 | - | - | Toxin |
| N4276_RS13260 | 2693727..2694080 | - | 354 | WP_000722370.1 | YebY family protein | - |
| N4276_RS13265 | 2694097..2694972 | - | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| N4276_RS13270 | 2694973..2695347 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| N4276_RS13275 | 2695485..2695715 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| N4276_RS13280 | 2695823..2696479 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| N4276_RS13285 | 2696503..2697201 | + | 699 | WP_000944288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 / sopE2 / sodCI | 2652509..2715497 | 62988 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T257761 NZ_CP104362:c2693587-2693484 [Salmonella enterica]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT257761 NZ_CP104362:2693482-2693627 [Salmonella enterica]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
