Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2808358..2808629 | Replicon | chromosome |
| Accession | NZ_CP103739 | ||
| Organism | Escherichia coli strain 3359 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2808396..2808499 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2808358..2808629 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5T33_RS13880 | 2805515..2806954 | + | 1440 | WP_001397399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| M5T33_RS13885 | 2807072..2807308 | + | 237 | WP_001338166.1 | YebV family protein | - |
| M5T33_RS13890 | 2807413..2807604 | + | 192 | WP_001338167.1 | YebW family protein | - |
| M5T33_RS13895 | 2807605..2808261 | - | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| - | 2808358..2808629 | + | 272 | - | - | Antitoxin |
| - | 2808396..2808499 | - | 104 | - | - | Toxin |
| M5T33_RS13900 | 2808657..2808998 | - | 342 | WP_000976472.1 | YebY family protein | - |
| M5T33_RS13905 | 2809011..2809883 | - | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| M5T33_RS13910 | 2809887..2810261 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| M5T33_RS13915 | 2810400..2810630 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| M5T33_RS13920 | 2810732..2811388 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| M5T33_RS13925 | 2811412..2812074 | + | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T256431 NZ_CP103739:c2808499-2808396 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT256431 NZ_CP103739:2808358-2808629 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
