Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2698930..2699139 | Replicon | chromosome |
| Accession | NZ_CP103642 | ||
| Organism | Enterobacter hormaechei strain 4453 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2698943..2699046 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2698930..2699139 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5S55_RS13040 (M5S55_13040) | 2695198..2696646 | + | 1449 | WP_195207010.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| M5S55_RS13045 (M5S55_13045) | 2696753..2696992 | + | 240 | WP_003859885.1 | YebV family protein | - |
| M5S55_RS13050 (M5S55_13050) | 2697027..2697671 | - | 645 | WP_017693252.1 | protein-serine/threonine phosphatase | - |
| M5S55_RS13055 (M5S55_13055) | 2697839..2698819 | + | 981 | WP_023303891.1 | VirK/YbjX family protein | - |
| M5S55_RS13060 (M5S55_13060) | 2698865..2699062 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2698930..2699139 | + | 210 | - | - | Antitoxin |
| - | 2698943..2699046 | - | 104 | - | - | Toxin |
| M5S55_RS13065 (M5S55_13065) | 2699188..2699526 | - | 339 | WP_003859787.1 | YebY family protein | - |
| M5S55_RS13070 (M5S55_13070) | 2699543..2700412 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| M5S55_RS13075 (M5S55_13075) | 2700414..2700785 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| M5S55_RS13080 (M5S55_13080) | 2700923..2701153 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| M5S55_RS13085 (M5S55_13085) | 2701265..2701915 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| M5S55_RS13090 (M5S55_13090) | 2701940..2702602 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T255985 NZ_CP103642:c2699046-2698943 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT255985 NZ_CP103642:2698930-2699139 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
