Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2331624..2331892 | Replicon | chromosome |
| Accession | NZ_CP103589 | ||
| Organism | Escherichia coli strain 4750 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2331752..2331854 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2331624..2331892 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5T00_RS11030 | 2328177..2328839 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| M5T00_RS11035 | 2328863..2329519 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| M5T00_RS11040 | 2329621..2329851 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| M5T00_RS11045 | 2329990..2330364 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| M5T00_RS11050 | 2330368..2331240 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| M5T00_RS11055 | 2331253..2331594 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2331624..2331892 | - | 269 | - | - | Antitoxin |
| - | 2331752..2331854 | + | 103 | - | - | Toxin |
| M5T00_RS11060 | 2331989..2332645 | + | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| M5T00_RS11065 | 2332646..2332837 | - | 192 | WP_024186842.1 | YebW family protein | - |
| M5T00_RS11070 | 2332942..2333178 | - | 237 | WP_001295499.1 | YebV family protein | - |
| M5T00_RS11075 | 2333297..2334736 | - | 1440 | WP_024186841.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T255699 NZ_CP103589:2331752-2331854 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT255699 NZ_CP103589:c2331892-2331624 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
