Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2123331..2123602 | Replicon | chromosome |
| Accession | NZ_CP103521 | ||
| Organism | Escherichia coli strain 2779 - blood draw same patient as MB9267 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2123461..2123564 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2123331..2123602 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5S63_RS10220 | 2119886..2120548 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| M5S63_RS10225 | 2120572..2121228 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| M5S63_RS10230 | 2121330..2121560 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| M5S63_RS10235 | 2121699..2122073 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| M5S63_RS10240 | 2122077..2122949 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| M5S63_RS10245 | 2122962..2123303 | + | 342 | WP_001520705.1 | YebY family protein | - |
| - | 2123331..2123602 | - | 272 | - | - | Antitoxin |
| - | 2123461..2123564 | + | 104 | - | - | Toxin |
| M5S63_RS10250 | 2123699..2124355 | + | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| M5S63_RS10255 | 2124356..2124547 | - | 192 | WP_001296140.1 | YebW family protein | - |
| M5S63_RS10260 | 2124652..2124888 | - | 237 | WP_001295499.1 | YebV family protein | - |
| M5S63_RS10265 | 2125006..2126445 | - | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T255296 NZ_CP103521:2123461-2123564 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT255296 NZ_CP103521:c2123602-2123331 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
