Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2123695..2123963 | Replicon | chromosome |
| Accession | NZ_CP103508 | ||
| Organism | Escherichia coli O25b:H4-ST131 strain 5506 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2123823..2123925 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2123695..2123963 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5T03_RS10185 | 2120248..2120910 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| M5T03_RS10190 | 2120934..2121590 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| M5T03_RS10195 | 2121692..2121922 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| M5T03_RS10200 | 2122061..2122435 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| M5T03_RS10205 | 2122439..2123311 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| M5T03_RS10210 | 2123324..2123665 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2123695..2123963 | - | 269 | - | - | Antitoxin |
| - | 2123823..2123925 | + | 103 | - | - | Toxin |
| M5T03_RS10215 | 2124060..2124716 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| M5T03_RS10220 | 2124717..2124908 | - | 192 | WP_001296140.1 | YebW family protein | - |
| M5T03_RS10225 | 2125013..2125249 | - | 237 | WP_001295499.1 | YebV family protein | - |
| M5T03_RS10230 | 2125366..2126805 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T255222 NZ_CP103508:2123823-2123925 [Escherichia coli O25b:H4-ST131]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT255222 NZ_CP103508:c2123963-2123695 [Escherichia coli O25b:H4-ST131]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
