Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4888889..4889160 | Replicon | chromosome |
| Accession | NZ_CP102675 | ||
| Organism | Escherichia coli strain XH987 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4889019..4889122 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4888889..4889160 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NU950_RS25795 | 4885444..4886106 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NU950_RS25800 | 4886130..4886786 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NU950_RS25805 | 4886888..4887118 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NU950_RS25810 | 4887257..4887631 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| NU950_RS25815 | 4887635..4888507 | + | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| NU950_RS25820 | 4888520..4888861 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 4888889..4889160 | - | 272 | - | - | Antitoxin |
| - | 4889019..4889122 | + | 104 | - | - | Toxin |
| NU950_RS25825 | 4889257..4889913 | + | 657 | WP_000812734.1 | protein-serine/threonine phosphatase | - |
| NU950_RS25830 | 4889914..4890105 | - | 192 | WP_001296140.1 | YebW family protein | - |
| NU950_RS25835 | 4890210..4890446 | - | 237 | WP_072649446.1 | YebV family protein | - |
| NU950_RS25840 | 4890564..4892003 | - | 1440 | WP_024190454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T253957 NZ_CP102675:4889019-4889122 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT253957 NZ_CP102675:c4889160-4888889 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
