Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1854064..1854210 | Replicon | chromosome |
| Accession | NZ_CP102479 | ||
| Organism | Klebsiella aerogenes strain TS2020 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1854099..1854202 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1854064..1854210 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NUT96_RS08780 | 1849173..1851233 | + | 2061 | WP_032708611.1 | oligopeptidase B | - |
| NUT96_RS08785 | 1851236..1851895 | - | 660 | WP_015366006.1 | exodeoxyribonuclease X | - |
| NUT96_RS08790 | 1851975..1852205 | - | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| NUT96_RS08795 | 1852340..1852714 | + | 375 | WP_015366008.1 | CopC domain-containing protein YobA | - |
| NUT96_RS08800 | 1852718..1853587 | + | 870 | WP_032708610.1 | copper homeostasis membrane protein CopD | - |
| NUT96_RS08805 | 1853601..1853942 | + | 342 | WP_015705946.1 | YebY family protein | - |
| - | 1854064..1854210 | - | 147 | - | - | Antitoxin |
| - | 1854099..1854202 | + | 104 | - | - | Toxin |
| NUT96_RS08810 | 1854330..1855277 | - | 948 | WP_032709999.1 | spore coat U domain-containing protein | - |
| NUT96_RS08815 | 1855296..1857620 | - | 2325 | WP_032708542.1 | fimbria/pilus outer membrane usher protein | - |
| NUT96_RS08820 | 1857623..1858372 | - | 750 | WP_015366013.1 | molecular chaperone | - |
| NUT96_RS08825 | 1858390..1858827 | - | 438 | WP_234276239.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T253712 NZ_CP102479:1854099-1854202 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 147 bp
>AT253712 NZ_CP102479:c1854210-1854064 [Klebsiella aerogenes]
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
