Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1988659..1988803 | Replicon | chromosome |
| Accession | NZ_CP102247 | ||
| Organism | Enterobacter asburiae strain R_A5.MM | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1988694..1988797 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1988659..1988803 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NQ230_RS09365 (NQ230_09365) | 1985142..1985804 | - | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
| NQ230_RS09370 (NQ230_09370) | 1985829..1986479 | - | 651 | WP_121424177.1 | carbon-nitrogen hydrolase family protein | - |
| NQ230_RS09375 (NQ230_09375) | 1986590..1986820 | - | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| NQ230_RS09380 (NQ230_09380) | 1986958..1987329 | + | 372 | WP_257260887.1 | CopC domain-containing protein YobA | - |
| NQ230_RS09385 (NQ230_09385) | 1987331..1988200 | + | 870 | WP_257260889.1 | copper homeostasis membrane protein CopD | - |
| NQ230_RS09390 (NQ230_09390) | 1988217..1988555 | + | 339 | WP_159514425.1 | YebY family protein | - |
| - | 1988659..1988803 | - | 145 | - | - | Antitoxin |
| - | 1988694..1988797 | + | 104 | - | - | Toxin |
| NQ230_RS09395 (NQ230_09395) | 1988996..1989892 | - | 897 | WP_257260891.1 | benzoate transporter | - |
| NQ230_RS09400 (NQ230_09400) | 1990067..1991008 | - | 942 | WP_193941508.1 | VirK/YbjX family protein | - |
| NQ230_RS09405 (NQ230_09405) | 1991177..1991821 | + | 645 | WP_257260892.1 | protein-serine/threonine phosphatase | - |
| NQ230_RS09410 (NQ230_09410) | 1991856..1992095 | - | 240 | WP_008500472.1 | YebV family protein | - |
| NQ230_RS09415 (NQ230_09415) | 1992201..1993649 | - | 1449 | WP_257260894.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T253390 NZ_CP102247:1988694-1988797 [Enterobacter asburiae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT253390 NZ_CP102247:c1988803-1988659 [Enterobacter asburiae]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
