Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2000328..2000473 | Replicon | chromosome |
| Accession | NZ_CP102186 | ||
| Organism | Klebsiella pneumoniae strain S234 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2000364..2000466 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2000328..2000473 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NQZ63_RS09790 (NQZ63_09790) | 1995458..1997518 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| NQZ63_RS09795 (NQZ63_09795) | 1997522..1998181 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NQZ63_RS09800 (NQZ63_09800) | 1998260..1998490 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NQZ63_RS09805 (NQZ63_09805) | 1998603..1998977 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NQZ63_RS09810 (NQZ63_09810) | 1998981..1999850 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| NQZ63_RS09815 (NQZ63_09815) | 1999867..2000205 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2000328..2000473 | - | 146 | - | - | Antitoxin |
| - | 2000364..2000466 | + | 103 | - | - | Toxin |
| NQZ63_RS09820 (NQZ63_09820) | 2000841..2000984 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NQZ63_RS09825 (NQZ63_09825) | 2001089..2002057 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| NQZ63_RS09830 (NQZ63_09830) | 2002214..2002867 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| NQZ63_RS09835 (NQZ63_09835) | 2002864..2003055 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NQZ63_RS09840 (NQZ63_09840) | 2003153..2003392 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NQZ63_RS09845 (NQZ63_09845) | 2003508..2004941 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T253300 NZ_CP102186:2000364-2000466 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT253300 NZ_CP102186:c2000473-2000328 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
