Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2062181..2062452 | Replicon | chromosome |
| Accession | NZ_CP101921 | ||
| Organism | Escherichia coli strain QA-1986 83 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2062311..2062414 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2062181..2062452 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NP438_RS09935 | 2058736..2059398 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NP438_RS09940 | 2059422..2060078 | - | 657 | WP_130559280.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NP438_RS09945 | 2060180..2060410 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NP438_RS09950 | 2060549..2060923 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| NP438_RS09955 | 2060927..2061799 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| NP438_RS09960 | 2061812..2062153 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2062181..2062452 | - | 272 | - | - | Antitoxin |
| - | 2062311..2062414 | + | 104 | - | - | Toxin |
| NP438_RS09965 | 2062549..2063205 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| NP438_RS09970 | 2063206..2063397 | - | 192 | WP_001296140.1 | YebW family protein | - |
| NP438_RS09975 | 2063502..2063738 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NP438_RS09980 | 2063856..2065295 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T252951 NZ_CP101921:2062311-2062414 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT252951 NZ_CP101921:c2062452-2062181 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
