Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2021231..2021502 | Replicon | chromosome |
| Accession | NZ_CP101615 | ||
| Organism | Escherichia coli strain DC71 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2021361..2021464 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2021231..2021502 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NOF56_RS09690 | 2017786..2018448 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NOF56_RS09695 | 2018472..2019128 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NOF56_RS09700 | 2019230..2019460 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NOF56_RS09705 | 2019599..2019973 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| NOF56_RS09710 | 2019977..2020849 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| NOF56_RS09715 | 2020862..2021203 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2021231..2021502 | - | 272 | - | - | Antitoxin |
| - | 2021361..2021464 | + | 104 | - | - | Toxin |
| NOF56_RS09720 | 2021599..2022255 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| NOF56_RS09725 | 2022256..2022447 | - | 192 | WP_001296140.1 | YebW family protein | - |
| NOF56_RS09730 | 2022552..2022788 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NOF56_RS09735 | 2022906..2024345 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1984198..2037340 | 53142 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T252389 NZ_CP101615:2021361-2021464 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT252389 NZ_CP101615:c2021502-2021231 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
