Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2682274..2682415 | Replicon | chromosome |
| Accession | NZ_CP101595 | ||
| Organism | Cronobacter dublinensis strain CFSA A84 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2682277..2682380 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2682274..2682415 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NNQ27_RS12925 (NNQ27_12935) | 2678842..2680281 | + | 1440 | WP_275884758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NNQ27_RS12930 (NNQ27_12940) | 2680392..2680631 | + | 240 | WP_007698851.1 | YebV family protein | - |
| NNQ27_RS12935 (NNQ27_12945) | 2680742..2680933 | + | 192 | WP_007714097.1 | YebW family protein | - |
| NNQ27_RS12940 (NNQ27_12950) | 2680934..2681578 | - | 645 | WP_275884759.1 | metallophosphoesterase | - |
| NNQ27_RS12945 (NNQ27_12955) | 2681925..2682017 | - | 93 | WP_209019718.1 | KPN_01571 family protein | - |
| - | 2682274..2682415 | + | 142 | - | - | Antitoxin |
| - | 2682277..2682380 | - | 104 | - | - | Toxin |
| NNQ27_RS12950 (NNQ27_12960) | 2682519..2682857 | - | 339 | WP_007698868.1 | YebY family protein | - |
| NNQ27_RS12955 (NNQ27_12965) | 2682872..2683741 | - | 870 | WP_275884760.1 | copper homeostasis membrane protein CopD | - |
| NNQ27_RS12960 (NNQ27_12970) | 2683746..2684120 | - | 375 | WP_007734211.1 | CopC domain-containing protein YobA | - |
| NNQ27_RS12965 (NNQ27_12975) | 2684267..2684497 | + | 231 | WP_007734209.1 | DNA polymerase III subunit theta | - |
| NNQ27_RS12970 (NNQ27_12980) | 2684573..2685235 | + | 663 | WP_007734207.1 | exodeoxyribonuclease X | - |
| NNQ27_RS12975 (NNQ27_12985) | 2685232..2687295 | - | 2064 | WP_275884761.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T252361 NZ_CP101595:c2682380-2682277 [Cronobacter dublinensis]
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 142 bp
>AT252361 NZ_CP101595:2682274-2682415 [Cronobacter dublinensis]
GATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCATTTAAGAATAGATGACGACAGCAGCTTTTCCAGT
GATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCATTTAAGAATAGATGACGACAGCAGCTTTTCCAGT
