Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1966388..1966533 | Replicon | chromosome |
| Accession | NZ_CP101546 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain KP82 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1966424..1966526 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1966388..1966533 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NMY34_RS09745 (NMY34_09735) | 1961518..1963578 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| NMY34_RS09750 (NMY34_09740) | 1963582..1964241 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NMY34_RS09755 (NMY34_09745) | 1964320..1964550 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NMY34_RS09760 (NMY34_09750) | 1964663..1965037 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NMY34_RS09765 (NMY34_09755) | 1965041..1965910 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| NMY34_RS09770 (NMY34_09760) | 1965927..1966265 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1966388..1966533 | - | 146 | - | - | Antitoxin |
| - | 1966424..1966526 | + | 103 | - | - | Toxin |
| NMY34_RS09775 (NMY34_09765) | 1966902..1967045 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NMY34_RS09780 (NMY34_09770) | 1967150..1968118 | - | 969 | WP_073971755.1 | VirK/YbjX family protein | - |
| NMY34_RS09785 (NMY34_09775) | 1968275..1968928 | + | 654 | WP_032441330.1 | protein-serine/threonine phosphatase | - |
| NMY34_RS09790 (NMY34_09780) | 1968925..1969116 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NMY34_RS09795 (NMY34_09785) | 1969214..1969453 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NMY34_RS09800 (NMY34_09790) | 1969569..1971002 | - | 1434 | WP_220231913.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T252264 NZ_CP101546:1966424-1966526 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT252264 NZ_CP101546:c1966533-1966388 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
