Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 870303..870963 Replicon chromosome
Accession NZ_CP101379
Organism Salmonella enterica strain SC2016290

Toxin (Protein)


Gene name cptA Uniprot ID Q57K70
Locus tag NMU35_RS04230 Protein ID WP_000244756.1
Coordinates 870550..870963 (+) Length 138 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID S5MU13
Locus tag NMU35_RS04225 Protein ID WP_000351186.1
Coordinates 870303..870569 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NMU35_RS04205 (866231) 866231..867664 - 1434 WP_001230141.1 6-phospho-beta-glucosidase BglA -
NMU35_RS04210 (867823) 867823..868134 + 312 WP_001182976.1 N(4)-acetylcytidine aminohydrolase -
NMU35_RS04215 (868298) 868298..868957 + 660 WP_000250289.1 hemolysin III family protein -
NMU35_RS04220 (869073) 869073..870053 - 981 WP_000874172.1 tRNA-modifying protein YgfZ -
NMU35_RS04225 (870303) 870303..870569 + 267 WP_000351186.1 FAD assembly factor SdhE Antitoxin
NMU35_RS04230 (870550) 870550..870963 + 414 WP_000244756.1 protein YgfX Toxin
NMU35_RS04235 (871016) 871016..871537 - 522 WP_001055885.1 flavodoxin FldB -
NMU35_RS04240 (871650) 871650..872546 + 897 WP_000434302.1 site-specific tyrosine recombinase XerD -
NMU35_RS04245 (872570) 872570..873283 + 714 WP_000745625.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
NMU35_RS04250 (873289) 873289..875022 + 1734 WP_000813394.1 single-stranded-DNA-specific exonuclease RecJ -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-131)

Antitoxin

Flavinator of succinate dehydrogenase

(7-79)


Sequences

Toxin        


Download         Length: 138 a.a.        Molecular weight: 16183.15 Da        Isoelectric Point: 10.7537

>T252033 WP_000244756.1 NZ_CP101379:870550-870963 [Salmonella enterica]
VVLWQSDLRVSWRAQWISLLIHGLVAAVILLMPWPLSYTPLWMILLSLVVFDCVRSQRRINTCQGEIKLLMDGRLRWQGQ
DWTLLRPPWLLKSGMVLRLRAESGRHQHLWLAADSMEEAEWRELRRILLQQPISGQH

Download         Length: 414 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10550.05 Da        Isoelectric Point: 6.0783

>AT252033 WP_000351186.1 NZ_CP101379:870303-870569 [Salmonella enterica]
MDIHNKARIHWACRRGMRELDISIMPFFEHEYDSLSDEEKRIFVRLLQSDDPDLFNWLMNHGKPADAELEQMVRLIQTRN
RERGPVAI

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A3Z1E9V5

Antitoxin

Source ID Structure
AlphaFold DB A0A5I0YWH4

References