Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2238942..2239210 | Replicon | chromosome |
| Accession | NZ_CP101305 | ||
| Organism | Escherichia coli strain 2002-3211 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2239069..2239172 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2238942..2239210 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NMK57_RS11065 | 2235495..2236157 | - | 663 | WP_000944246.1 | exodeoxyribonuclease X | - |
| NMK57_RS11070 | 2236181..2236837 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NMK57_RS11075 | 2236939..2237169 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NMK57_RS11080 | 2237308..2237682 | + | 375 | WP_000168739.1 | CopC domain-containing protein YobA | - |
| NMK57_RS11085 | 2237686..2238558 | + | 873 | WP_000879277.1 | copper homeostasis membrane protein CopD | - |
| NMK57_RS11090 | 2238571..2238912 | + | 342 | WP_000976478.1 | YebY family protein | - |
| - | 2238942..2239210 | - | 269 | - | - | Antitoxin |
| - | 2239069..2239172 | + | 104 | - | - | Toxin |
| NMK57_RS11095 | 2239307..2239963 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| NMK57_RS11100 | 2239964..2240155 | - | 192 | WP_001296140.1 | YebW family protein | - |
| NMK57_RS11105 | 2240260..2240496 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NMK57_RS11110 | 2240614..2242053 | - | 1440 | WP_001343151.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T251865 NZ_CP101305:2239069-2239172 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT251865 NZ_CP101305:c2239210-2238942 [Escherichia coli]
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
