Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2172665..2172933 | Replicon | chromosome |
| Accession | NZ_CP099721 | ||
| Organism | Escherichia coli strain EC21GDE043 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2172793..2172895 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2172665..2172933 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NH569_RS10480 | 2169219..2169881 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NH569_RS10485 | 2169904..2170560 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NH569_RS10490 | 2170662..2170892 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NH569_RS10495 | 2171031..2171405 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NH569_RS10500 | 2171409..2172281 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| NH569_RS10505 | 2172294..2172635 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2172665..2172933 | - | 269 | - | - | Antitoxin |
| - | 2172793..2172895 | + | 103 | - | - | Toxin |
| NH569_RS10510 | 2173030..2173686 | + | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| NH569_RS10515 | 2173687..2173878 | - | 192 | WP_001296140.1 | YebW family protein | - |
| NH569_RS10520 | 2173983..2174219 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NH569_RS10525 | 2174337..2175776 | - | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T249321 NZ_CP099721:2172793-2172895 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT249321 NZ_CP099721:c2172933-2172665 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
