Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | /RES-TIGR02293 |
| Location | 96331..97238 | Replicon | plasmid unnamed |
| Accession | NZ_CP099543 | ||
| Organism | Pantoea ananatis strain JT8-6 | ||
Toxin (Protein)
| Gene name | - | Uniprot ID | - |
| Locus tag | NG830_RS22475 | Protein ID | WP_028722483.1 |
| Coordinates | 96771..97238 (+) | Length | 156 a.a. |
Antitoxin (Protein)
| Gene name | - | Uniprot ID | A0A8A4JZ23 |
| Locus tag | NG830_RS22470 | Protein ID | WP_014598335.1 |
| Coordinates | 96331..96774 (+) | Length | 148 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NG830_RS22440 (NG830_22400) | 91469..91855 | - | 387 | WP_064366551.1 | pyrimidine utilization protein C | - |
| NG830_RS22445 (NG830_22405) | 91881..92633 | - | 753 | WP_263775631.1 | pyrimidine utilization protein B | - |
| NG830_RS22450 (NG830_22410) | 92630..93721 | - | 1092 | WP_263775632.1 | pyrimidine utilization protein A | - |
| NG830_RS22455 (NG830_22415) | 94120..94809 | + | 690 | WP_028722481.1 | HTH-type transcriptional regulator RutR | - |
| NG830_RS22460 (NG830_22420) | 94885..95580 | - | 696 | WP_028722482.1 | hypothetical protein | - |
| NG830_RS22465 (NG830_22425) | 95720..95944 | - | 225 | WP_013027863.1 | KTSC domain-containing protein | - |
| NG830_RS22470 (NG830_22430) | 96331..96774 | + | 444 | WP_014598335.1 | DUF2384 domain-containing protein | Antitoxin |
| NG830_RS22475 (NG830_22435) | 96771..97238 | + | 468 | WP_028722483.1 | RES family NAD+ phosphorylase | Toxin |
| NG830_RS22480 (NG830_22440) | 97882..99276 | + | 1395 | WP_064366549.1 | flagellar filament capping protein FliD | - |
| NG830_RS22485 (NG830_22445) | 99960..100895 | + | 936 | WP_028722485.1 | flagellin | - |
| NG830_RS22490 (NG830_22450) | 100957..101529 | - | 573 | WP_028722486.1 | NADPH-dependent FMN reductase | - |
| NG830_RS22495 (NG830_22455) | 101617..101850 | + | 234 | WP_028722487.1 | DUF333 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Non-Mobilizable plasmid | - | fliC / vipA/tssB / vipB/tssC / vasE/tssK / dotU/tssL / tssF / tssG | 1..272048 | 272048 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 156 a.a. Molecular weight: 17204.71 Da Isoelectric Point: 5.1568
>T249104 WP_028722483.1 NZ_CP099543:96771-97238 [Pantoea ananatis]
MKLYRMTKTRYLGSAWSGFGAREGGGRWNSVGVSMVYASETASLTMLETLIHLQSASVLDCFTLMSIDVPDRLIEWIDIK
QLPDDWAAPEAPAALRLFGDAWIQSGGSVALRVPSALSPVESNYLLNPEHPEFNAIVRQAINIPFLFDVRFSRQA
MKLYRMTKTRYLGSAWSGFGAREGGGRWNSVGVSMVYASETASLTMLETLIHLQSASVLDCFTLMSIDVPDRLIEWIDIK
QLPDDWAAPEAPAALRLFGDAWIQSGGSVALRVPSALSPVESNYLLNPEHPEFNAIVRQAINIPFLFDVRFSRQA
Download Length: 468 bp
Antitoxin
Download Length: 148 a.a. Molecular weight: 16375.69 Da Isoelectric Point: 7.0208
>AT249104 WP_014598335.1 NZ_CP099543:96331-96774 [Pantoea ananatis]
MKQFTLPVSAAEPDRLWQFAGLSSADGVMLMDQIDDGLDGTVASRIVTWAQISQAELRRMTGIAGSTFTRGVKSRFTAEQ
SERLVRFIRVMDRAVELFEGDKEKARQWLNEPARALGNKKPADLVASETGAYEVLKLITRLEHGVYS
MKQFTLPVSAAEPDRLWQFAGLSSADGVMLMDQIDDGLDGTVASRIVTWAQISQAELRRMTGIAGSTFTRGVKSRFTAEQ
SERLVRFIRVMDRAVELFEGDKEKARQWLNEPARALGNKKPADLVASETGAYEVLKLITRLEHGVYS
Download Length: 444 bp
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|