Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2854934..2855077 | Replicon | chromosome |
| Accession | NZ_CP099387 | ||
| Organism | Citrobacter braakii strain RHB08-E3-C01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2854939..2855042 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2854934..2855077 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFJ49_RS13840 | 2850597..2851985 | + | 1389 | WP_047358619.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NFJ49_RS13845 | 2852086..2852322 | + | 237 | WP_029139506.1 | YebV family protein | - |
| NFJ49_RS13850 | 2852425..2852616 | + | 192 | WP_016152779.1 | YebW family protein | - |
| NFJ49_RS13855 | 2852617..2853258 | - | 642 | WP_016156284.1 | protein-serine/threonine phosphatase | - |
| NFJ49_RS13860 | 2853336..2854616 | - | 1281 | WP_149380983.1 | hypothetical protein | - |
| - | 2854934..2855077 | + | 144 | - | - | Antitoxin |
| - | 2854939..2855042 | - | 104 | - | - | Toxin |
| NFJ49_RS13865 | 2855198..2855536 | - | 339 | WP_003833793.1 | YebY family protein | - |
| NFJ49_RS13870 | 2855557..2856429 | - | 873 | WP_075847179.1 | copper homeostasis membrane protein CopD | - |
| NFJ49_RS13875 | 2856433..2856807 | - | 375 | WP_137381108.1 | CopC domain-containing protein YobA | - |
| NFJ49_RS13880 | 2856951..2857181 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| NFJ49_RS13885 | 2857288..2857944 | + | 657 | WP_047415371.1 | carbon-nitrogen hydrolase family protein | - |
| NFJ49_RS13890 | 2857968..2858630 | + | 663 | WP_016152773.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2845186..2931056 | 85870 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248825 NZ_CP099387:c2855042-2854939 [Citrobacter braakii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT248825 NZ_CP099387:2854934-2855077 [Citrobacter braakii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
