Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 336487..336732 | Replicon | chromosome |
| Accession | NZ_CP099344 | ||
| Organism | Escherichia marmotae strain RHB35-E2-C08 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 336615..336718 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 336487..336732 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFK54_RS01740 | 333040..333702 | - | 663 | WP_000944296.1 | exodeoxyribonuclease X | - |
| NFK54_RS01745 | 333727..334383 | - | 657 | WP_000122137.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NFK54_RS01750 | 334484..334714 | - | 231 | WP_000916764.1 | DNA polymerase III subunit theta | - |
| NFK54_RS01755 | 334853..335227 | + | 375 | WP_000168753.1 | CopC domain-containing protein YobA | - |
| NFK54_RS01760 | 335231..336103 | + | 873 | WP_000879335.1 | copper homeostasis membrane protein CopD | - |
| NFK54_RS01765 | 336116..336457 | + | 342 | WP_000976465.1 | YebY family protein | - |
| - | 336487..336732 | - | 246 | - | - | Antitoxin |
| - | 336615..336718 | + | 104 | - | - | Toxin |
| NFK54_RS01770 | 336867..337523 | + | 657 | WP_000806226.1 | protein-serine/threonine phosphatase | - |
| NFK54_RS01775 | 337524..337715 | - | 192 | WP_001516263.1 | YebW family protein | - |
| NFK54_RS01780 | 337820..338056 | - | 237 | WP_001516264.1 | YebV family protein | - |
| NFK54_RS01785 | 338172..339611 | - | 1440 | WP_024214557.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248549 NZ_CP099344:336615-336718 [Escherichia marmotae]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 246 bp
>AT248549 NZ_CP099344:c336732-336487 [Escherichia marmotae]
CTGGCTTTATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGCG
TAAAGTGGTCAGAAAAAAAGCGCGTTTATCATCCTCTAAAATGTTAAAAACCGCCCGTTCTGGTGAAAGCACCCGGGCGG
TTTTTT
CTGGCTTTATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGCG
TAAAGTGGTCAGAAAAAAAGCGCGTTTATCATCCTCTAAAATGTTAAAAACCGCCCGTTCTGGTGAAAGCACCCGGGCGG
TTTTTT
