Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2844313..2844465 | Replicon | chromosome |
| Accession | NZ_CP099325 | ||
| Organism | Enterobacter ludwigii strain RHB47-SO-C01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2844327..2844430 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2844313..2844465 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFL61_RS13535 (NFL61_13530) | 2840587..2842029 | + | 1443 | WP_068794733.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NFL61_RS13540 (NFL61_13535) | 2842135..2842374 | + | 240 | WP_020883412.1 | YebV family protein | - |
| NFL61_RS13545 (NFL61_13540) | 2842409..2843053 | - | 645 | WP_068794734.1 | protein-serine/threonine phosphatase | - |
| NFL61_RS13550 (NFL61_13545) | 2843221..2844162 | + | 942 | WP_014170619.1 | VirK/YbjX family protein | - |
| - | 2844313..2844465 | + | 153 | - | - | Antitoxin |
| - | 2844327..2844430 | - | 104 | - | - | Toxin |
| NFL61_RS13555 (NFL61_13550) | 2844569..2844907 | - | 339 | WP_014170622.1 | YebY family protein | - |
| NFL61_RS13560 (NFL61_13555) | 2844924..2845793 | - | 870 | WP_279258396.1 | copper homeostasis membrane protein CopD | - |
| NFL61_RS13565 (NFL61_13560) | 2845795..2846166 | - | 372 | WP_153852777.1 | CopC domain-containing protein YobA | - |
| NFL61_RS13570 (NFL61_13565) | 2846304..2846534 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| NFL61_RS13575 (NFL61_13570) | 2846644..2847294 | + | 651 | WP_073396013.1 | carbon-nitrogen hydrolase family protein | - |
| NFL61_RS13580 (NFL61_13575) | 2847319..2847981 | + | 663 | WP_014170626.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248451 NZ_CP099325:c2844430-2844327 [Enterobacter ludwigii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 153 bp
>AT248451 NZ_CP099325:2844313-2844465 [Enterobacter ludwigii]
GCTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
GCTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
