Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2955740..2955885 | Replicon | chromosome |
| Accession | NZ_CP099311 | ||
| Organism | Enterobacter ludwigii strain RHB43-SE-C05 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2955747..2955850 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2955740..2955885 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFK84_RS14125 (NFK84_14110) | 2951586..2951825 | + | 240 | WP_020883412.1 | YebV family protein | - |
| NFK84_RS14130 (NFK84_14115) | 2951860..2952504 | - | 645 | WP_181216027.1 | protein-serine/threonine phosphatase | - |
| NFK84_RS14135 (NFK84_14120) | 2952672..2953613 | + | 942 | WP_059306269.1 | VirK/YbjX family protein | - |
| NFK84_RS14140 (NFK84_14125) | 2954164..2954367 | + | 204 | WP_230684199.1 | hypothetical protein | - |
| NFK84_RS14145 (NFK84_14130) | 2954433..2955299 | + | 867 | WP_279262261.1 | benzoate transporter | - |
| - | 2955740..2955885 | + | 146 | - | - | Antitoxin |
| - | 2955747..2955850 | - | 104 | - | - | Toxin |
| NFK84_RS14150 (NFK84_14135) | 2955989..2956327 | - | 339 | WP_014170622.1 | YebY family protein | - |
| NFK84_RS14155 (NFK84_14140) | 2956344..2957213 | - | 870 | WP_032678425.1 | copper homeostasis membrane protein CopD | - |
| NFK84_RS14160 (NFK84_14145) | 2957215..2957586 | - | 372 | WP_279261344.1 | CopC domain-containing protein YobA | - |
| NFK84_RS14165 (NFK84_14150) | 2957724..2957954 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| NFK84_RS14170 (NFK84_14155) | 2958064..2958714 | + | 651 | WP_279261345.1 | carbon-nitrogen hydrolase family protein | - |
| NFK84_RS14175 (NFK84_14160) | 2958739..2959401 | + | 663 | WP_014170626.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248395 NZ_CP099311:c2955850-2955747 [Enterobacter ludwigii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT248395 NZ_CP099311:2955740-2955885 [Enterobacter ludwigii]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
